If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ), 'gf_id' => 'HOM05D000726', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000726' ), 'data_identifier' => 'HOM05D000726', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000726', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p35630' => 'bna', 'A03p28710' => 'bna', 'A03p40860' => 'bna', 'A04p16480' => 'bna', 'A05p19100' => 'bna', 'A05p30780' => 'bna', 'A06p01930' => 'bna', 'A07p00490' => 'bna', 'A07p32680' => 'bna', 'A08p02240' => 'bna', 'A08p04100' => 'bna', 'A08p28450' => 'bna', 'A09p29380' => 'bna', 'A09p57910' => 'bna', 'Aa31LG10G2640' => 'aar', 'Aa31LG10G4660' => 'aar', 'Aa31LG2G2150' => 'aar', 'Aa31LG7G14730' => 'aar', 'Aa31LG7G6690' => 'aar', 'Aa31LG8G3250' => 'aar', 'Aa31LG8G5660' => 'aar', 'Aa31LG9G14990' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.495' => 'aag', 'Actinidia01375' => 'ach', 'Actinidia01812' => 'ach', 'Actinidia07474' => 'ach', 'Actinidia08988' => 'ach', 'Actinidia12861' => 'ach', 'Actinidia15619' => 'ach', 'Actinidia17759' => 'ach', 'Actinidia21674' => 'ach', 'Actinidia24635' => 'ach', 'Actinidia27903' => 'ach', 'Actinidia28147' => 'ach', 'Actinidia28369' => 'ach', 'Actinidia29558' => 'ach', 'Actinidia32736' => 'ach', 'Actinidia36435' => 'ach', 'Ah.01g019460' => 'amhyb', 'Ah.03g140460' => 'amhyb', 'Ah.09g231120' => 'amhyb', 'AL1G36280' => 'aly', 'AL1G56170' => 'aly', 'AL1G56250' => 'aly', 'AL1G60440' => 'aly', 'AL2G19510' => 'aly', 'AL3G28750' => 'aly', 'AL3G32200' => 'aly', 'AL4G11190' => 'aly', 'AL6G43340' => 'aly', 'AL7G50690' => 'aly', 'AL8G39790' => 'aly', 'Aqoxy5G01661' => 'aox', 'Aqoxy6G00448' => 'aox', 'Aqoxy6G02647' => 'aox', 'Aqoxy7G01642' => 'aox', 'Aqoxy7G03850' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1H4K7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1JN7SV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1N4KQX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZHU8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.439F1X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4ILD2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6361M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6Y8KKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8JE5KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8KJM5C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YN93R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKF02' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4RKER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWZ446' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJC96K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHNB2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1PHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SS7A45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W02XZP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WMY7WD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z98NA8' => 'arhy', 'AT1G22740' => 'ath', 'AT1G49300' => 'ath', 'AT1G52280' => 'ath', 'AT1G64960' => 'ath', 'AT2G21880' => 'ath', 'AT3G16100' => 'ath', 'AT3G18820' => 'ath', 'AT4G02910' => 'ath', 'AT4G09720' => 'ath', 'AT5G39620' => 'ath', 'ATR0208G027' => 'atr', 'ATR0208G028' => 'atr', 'ATR0315G022' => 'atr', 'ATR0733G219' => 'atr', 'ATR1120G188' => 'atr', 'Atru.BG.105.p' => 'acertr', 'Atru.chr13.1973' => 'acertr', 'Atru.chr3.177' => 'acertr', 'Atru.chr4.414' => 'acertr', 'Atru.chr5.2999' => 'acertr', 'Atru.chr7.1361' => 'acertr', 'AUR62003297' => 'cqu', 'AUR62003999' => 'cqu', 'AUR62009333' => 'cqu', 'AUR62010982' => 'cqu', 'AUR62011334' => 'cqu', 'AUR62016727' => 'cqu', 'AUR62021491' => 'cqu', 'AUR62023019' => 'cqu', 'AUR62026614' => 'cqu', 'AUR62027165' => 'cqu', 'AUR62034920' => 'cqu', 'AUR62040247' => 'cqu', 'BcaB01g01420' => 'bca', 'BcaB01g02778' => 'bca', 'BcaB02g11016' => 'bca', 'BcaB02g11063' => 'bca', 'BcaB03g15339' => 'bca', 'BcaB04g17161' => 'bca', 'BcaB04g17353' => 'bca', 'BcaB04g19007' => 'bca', 'BcaB04g20744' => 'bca', 'BcaB06g25935' => 'bca', 'BcaB06g27794' => 'bca', 'BcaB08g35010' => 'bca', 'BcaC01g01317' => 'bca', 'BcaC01g04704' => 'bca', 'BcaC02g08754' => 'bca', 'BcaC05g27511' => 'bca', 'BcaC05g28568' => 'bca', 'BcaC06g36703' => 'bca', 'BcaC07g37069' => 'bca', 'BcaC07g39174' => 'bca', 'BcaC07g41113' => 'bca', 'BcaC08g43382' => 'bca', 'BcaC08g43980' => 'bca', 'BcaC09g48851' => 'bca', 'BolC1t04498H' => 'bol', 'BolC1t05060H' => 'bol', 'BolC3t15782H' => 'bol', 'BolC3t17210H' => 'bol', 'BolC3t17273H' => 'bol', 'BolC3t21377H' => 'bol', 'BolC4t26692H' => 'bol', 'BolC5t32207H' => 'bol', 'BolC5t33397H' => 'bol', 'BolC6t35838H' => 'bol', 'BolC6t36555H' => 'bol', 'BolC6t38979H' => 'bol', 'BolC7t40530H' => 'bol', 'BolC8t47233H' => 'bol', 'BolC8t49804H' => 'bol', 'BolC8t51681H' => 'bol', 'BraA01t03645Z' => 'bra', 'BraA03t12070Z' => 'bra', 'BraA03t13244Z' => 'bra', 'BraA04t17283Z' => 'bra', 'BraA05t20812Z' => 'bra', 'BraA05t21920Z' => 'bra', 'BraA06t23409Z' => 'bra', 'BraA07t27841Z' => 'bra', 'BraA07t27842Z' => 'bra', 'BraA07t30892Z' => 'bra', 'BraA08t32269Z' => 'bra', 'BraA08t32435Z' => 'bra', 'BraA08t34774Z' => 'bra', 'BraA09t38505Z' => 'bra', 'BraA09t41183Z' => 'bra', 'C01p45220' => 'bna', 'C03p34720' => 'bna', 'C03p49760' => 'bna', 'C03p90540' => 'bna', 'C04p51000' => 'bna', 'C05p34810' => 'bna', 'C05p46690' => 'bna', 'C06p07490' => 'bna', 'C06p13830' => 'bna', 'C06p38860' => 'bna', 'C07p00940' => 'bna', 'C08p04300' => 'bna', 'C08p21650' => 'bna', 'C08p41140' => 'bna', 'CAN.G278.12' => 'can', 'CAN.G322.128' => 'can', 'CAN.G564.25' => 'can', 'CAN.G997.7' => 'can', 'CANSAT01G0702' => 'cansat', 'CANSAT01G3261' => 'cansat', 'CANSAT25G3679' => 'cansat', 'CANSAT56G1319' => 'cansat', 'CANSAT56G4498' => 'cansat', 'CARHR023100' => 'chi', 'CARHR039290' => 'chi', 'CARHR042390' => 'chi', 'CARHR056360' => 'chi', 'CARHR091260' => 'chi', 'CARHR094230' => 'chi', 'CARHR112920' => 'chi', 'CARHR133720' => 'chi', 'CARHR257550' => 'chi', 'CARHR260650' => 'chi', 'CARHR262670' => 'chi', 'Carub.0001s2225' => 'cru', 'Carub.0001s3847' => 'cru', 'Carub.0001s4124' => 'cru', 'Carub.0002s1010' => 'cru', 'Carub.0003s1583' => 'cru', 'Carub.0003s1864' => 'cru', 'Carub.0004s0091' => 'cru', 'Carub.0006s2819' => 'cru', 'Ca_01124_v3' => 'car', 'Ca_04657_v3' => 'car', 'Ca_10646_v3' => 'car', 'Ca_17691_v3' => 'car', 'Ca_20377_v3' => 'car', 'Ca_20863_v3' => 'car', 'Ca_24700_v3' => 'car', 'CBR_g4187' => 'cbr', 'Cc02_g17670' => 'ccan', 'Cc04_g03150' => 'ccan', 'Cc07_g07020' => 'ccan', 'Cc07_g16410' => 'ccan', 'Cc10_g06410' => 'ccan', 'CDE02G0149' => 'cde', 'CDE04G3158' => 'cde', 'CDE04G3792' => 'cde', 'CDE05G1278' => 'cde', 'CDE05G1627' => 'cde', 'CDE05G2900' => 'cde', 'CDE06G0373' => 'cde', 'Cfa002085' => 'cfa', 'Cfa004123' => 'cfa', 'Cfa005012' => 'cfa', 'Cfa018261' => 'cfa', 'Ciclev10002522m.g' => 'ccl', 'Ciclev10009505m.g' => 'ccl', 'Ciclev10024730m.g' => 'ccl', 'Ciclev10026484m.g' => 'ccl', 'Ciclev10029292m.g' => 'ccl', 'CiPaw.01G005300' => 'cil', 'CiPaw.01G005400' => 'cil', 'CiPaw.01G237100' => 'cil', 'CiPaw.02G149700' => 'cil', 'CiPaw.03G133400' => 'cil', 'CiPaw.03G231200' => 'cil', 'CiPaw.04G090800' => 'cil', 'CiPaw.05G063500' => 'cil', 'CiPaw.16G007300' => 'cil', 'ClCG01G017520' => 'cla', 'ClCG02G000960' => 'cla', 'ClCG02G005090' => 'cla', 'ClCG09G002000' => 'cla', 'ClCG09G010700' => 'cla', 'COL.COLO4_10997' => 'col', 'COL.COLO4_11566' => 'col', 'COL.COLO4_25917' => 'col', 'COL.COLO4_30404' => 'col', 'Cpa.g.sc191.15' => 'cpa', 'Cpa.g.sc26.123' => 'cpa', 'Cpa.g.sc6.25' => 'cpa', 'Cpa.g.sc6.26' => 'cpa', 'Cpa.g.sc62.138' => 'cpa', 'Cre06.g262800' => 'cre', 'Cre06.g311900' => 'cre', 'CsaV3_2G017730' => 'csa', 'CsaV3_6G044070' => 'csa', 'CsaV3_7G021710' => 'csa', 'CsaV3_7G023490' => 'csa', 'CsaV3_7G033340' => 'csa', 'CSS0005923' => 'camsi', 'CSS0006980' => 'camsi', 'CSS0010004' => 'camsi', 'CSS0012395' => 'camsi', 'CSS0015479' => 'camsi', 'CSS0019239' => 'camsi', 'CSS0022432' => 'camsi', 'CSS0023840' => 'camsi', 'CSS0029890' => 'camsi', 'CSS0035010' => 'camsi', 'CSS0040376' => 'camsi', 'CSS0045070' => 'camsi', 'DCAR_001377' => 'dca', 'DCAR_010826' => 'dca', 'DCAR_013066' => 'dca', 'DCAR_022114' => 'dca', 'DCAR_028706' => 'dca', 'Dinv02473' => 'din', 'Dinv19473' => 'din', 'Dinv23535' => 'din', 'Dinv26921' => 'din', 'Dinv30494' => 'din', 'Dinv36640' => 'din', 'Dinv38031' => 'din', 'Dinv41611' => 'din', 'Dinv42071' => 'din', 'Dinv42679' => 'din', 'Duzib041G0271' => 'dzi', 'Duzib052G0551' => 'dzi', 'Duzib093G1702' => 'dzi', 'Duzib116G0673' => 'dzi', 'Duzib132G0237' => 'dzi', 'Duzib147G0272' => 'dzi', 'Duzib160G0370' => 'dzi', 'Duzib168G1281' => 'dzi', 'Duzib177G1184' => 'dzi', 'Duzib187G0535' => 'dzi', 'Duzib235G0642' => 'dzi', 'Duzib248G0142' => 'dzi', 'ECA232G2303' => 'eca', 'ECA232G3430' => 'eca', 'ECA234G1301' => 'eca', 'ECA234G3291' => 'eca', 'ECA236G0252' => 'eca', 'ECA247G3517' => 'eca', 'EL10Ac1g01629' => 'bvu', 'EL10Ac2g04077' => 'bvu', 'EL10Ac6g14772' => 'bvu', 'EL10Ac6g15628' => 'bvu', 'EL10Ac8g18482' => 'bvu', 'EL10Ac9g21734' => 'bvu', 'Eucgr.C03821' => 'egr', 'Eucgr.F03029' => 'egr', 'Eucgr.F04166' => 'egr', 'Eucgr.G00442' => 'egr', 'Eucgr.G01650' => 'egr', 'Eucgr.H02305' => 'egr', 'Eucgr.I00315' => 'egr', 'Eucgr.J02962' => 'egr', 'FAN02G1686' => 'fan', 'FAN05G1028' => 'fan', 'FAN05G3645' => 'fan', 'FAN09G4729' => 'fan', 'FAN14G0573' => 'fan', 'FAN14G3110' => 'fan', 'FAN15G2628' => 'fan', 'FAN15G3366' => 'fan', 'FAN19G2009' => 'fan', 'FAN20G1491' => 'fan', 'FAN23G0976' => 'fan', 'FAN24G0181' => 'fan', 'FAN24G2295' => 'fan', 'FAN24G2854' => 'fan', 'FAN26G0671' => 'fan', 'FAN27G1851' => 'fan', 'FAN27G2936' => 'fan', 'FAN28G0063' => 'fan', 'FvH4_1g22870' => 'fve', 'FvH4_2g08630' => 'fve', 'FvH4_2g12800' => 'fve', 'FvH4_6g31560' => 'fve', 'FvH4_6g31570' => 'fve', 'Glyma.01G193500' => 'gma', 'Glyma.05G184600' => 'gma', 'Glyma.07G004500' => 'gma', 'Glyma.08G142600' => 'gma', 'Glyma.08G205300' => 'gma', 'Glyma.08G243550' => 'gma', 'Glyma.10G220100' => 'gma', 'Glyma.11G048366' => 'gma', 'Glyma.11G048432' => 'gma', 'Glyma.11G118800' => 'gma', 'Glyma.12G044100' => 'gma', 'Glyma.20G171600' => 'gma', 'Gohir.A02G062000' => 'ghi', 'Gohir.A02G120500' => 'ghi', 'Gohir.A03G193900' => 'ghi', 'Gohir.A05G247000' => 'ghi', 'Gohir.A05G271500' => 'ghi', 'Gohir.A09G082500' => 'ghi', 'Gohir.A10G081000' => 'ghi', 'Gohir.A11G215400' => 'ghi', 'Gohir.A12G028200' => 'ghi', 'Gohir.A12G092466' => 'ghi', 'Gohir.A13G035000' => 'ghi', 'Gohir.D02G067700' => 'ghi', 'Gohir.D02G214900' => 'ghi', 'Gohir.D03G066200' => 'ghi', 'Gohir.D05G248500' => 'ghi', 'Gohir.D05G273700' => 'ghi', 'Gohir.D09G044000' => 'ghi', 'Gohir.D09G082400' => 'ghi', 'Gohir.D10G070400' => 'ghi', 'Gohir.D11G207900' => 'ghi', 'Gohir.D11G284801' => 'ghi', 'Gohir.D12G027800' => 'ghi', 'Gohir.D12G084702' => 'ghi', 'Gohir.D12G093600' => 'ghi', 'Gohir.D13G033400' => 'ghi', 'Gorai.003G064900' => 'gra', 'Gorai.005G076500' => 'gra', 'Gorai.005G242800' => 'gra', 'Gorai.006G050900' => 'gra', 'Gorai.006G098100' => 'gra', 'Gorai.007G222900' => 'gra', 'Gorai.007G307900' => 'gra', 'Gorai.008G028300' => 'gra', 'Gorai.008G101600' => 'gra', 'Gorai.009G259500' => 'gra', 'Gorai.009G286800' => 'gra', 'Gorai.011G074700' => 'gra', 'Gorai.012G090400' => 'gra', 'Gorai.013G037800' => 'gra', 'GSVIVG01000124001' => 'vvi', 'GSVIVG01006798001' => 'vvi', 'GSVIVG01013686001' => 'vvi', 'GSVIVG01013688001' => 'vvi', 'GSVIVG01017061001' => 'vvi', 'GSVIVG01022246001' => 'vvi', 'GSVIVG01031953001' => 'vvi', 'GSVIVG01037551001' => 'vvi', 'HanXRQChr02g0042421' => 'han', 'HanXRQChr03g0084451' => 'han', 'HanXRQChr04g0111651' => 'han', 'HanXRQChr08g0216651' => 'han', 'HanXRQChr09g0258301' => 'han', 'HanXRQChr09g0259691' => 'han', 'HanXRQChr10g0278741' => 'han', 'HanXRQChr10g0307241' => 'han', 'HanXRQChr10g0317901' => 'han', 'HanXRQChr12g0373111' => 'han', 'HanXRQChr12g0376841' => 'han', 'Haze_02375' => 'cav', 'Haze_15292' => 'cav', 'Haze_16385' => 'cav', 'Haze_17827' => 'cav', 'Haze_17830' => 'cav', 'Haze_25057' => 'cav', 'Haze_25738' => 'cav', 'Haze_27559' => 'cav', 'Hma1.2p1_0066F.1_g036500' => 'hma', 'Hma1.2p1_0276F.1_g110960' => 'hma', 'Hma1.2p1_1455F.1_g284370' => 'hma', 'Hma1.2p1_1463F.1_g285080' => 'hma', 'Hma1.2p1_2282F.1_g318860' => 'hma', 'HPP92_000526' => 'vpl', 'HPP92_002886' => 'vpl', 'HPP92_002905' => 'vpl', 'HPP92_005533' => 'vpl', 'HPP92_014039' => 'vpl', 'HPP92_014040' => 'vpl', 'HPP92_023936' => 'vpl', 'HPP92_023957' => 'vpl', 'HPP92_023959' => 'vpl', 'HPP92_028352' => 'vpl', 'HPP92_028353' => 'vpl', 'Hund00279' => 'sun', 'Hund06227' => 'sun', 'Hund09214' => 'sun', 'Hund16395' => 'sun', 'Hund19546' => 'sun', 'Hund19635' => 'sun', 'Hund26671' => 'sun', 'Lalb_Chr01g0002601' => 'lal', 'Lalb_Chr01g0009851' => 'lal', 'Lalb_Chr01g0012961' => 'lal', 'Lalb_Chr03g0035731' => 'lal', 'Lalb_Chr07g0184771' => 'lal', 'Lalb_Chr09g0323571' => 'lal', 'Lalb_Chr19g0129961' => 'lal', 'Lalb_Chr24g0395901' => 'lal', 'Lj2A567T20' => 'lonja', 'Lj2g0006912' => 'lja', 'Lj2g0009740' => 'lja', 'Lj3g0004222' => 'lja', 'Lj3g0007666' => 'lja', 'Lj4A705T44' => 'lonja', 'Lj4g0015266' => 'lja', 'Lj5A58T73' => 'lonja', 'Lj5C198T11' => 'lonja', 'Lj5g0010565' => 'lja', 'Lj7A652T73' => 'lonja', 'Lj7A95G20' => 'lonja', 'Lj7C386T22' => 'lonja', 'Lj7C94G0' => 'lonja', 'Lj9A369G64' => 'lonja', 'Lj9A369G65' => 'lonja', 'Lsat_1_v5_gn_2_113660' => 'lsa', 'Lsat_1_v5_gn_2_122321' => 'lsa', 'Lsat_1_v5_gn_2_42301' => 'lsa', 'Lsat_1_v5_gn_4_138121' => 'lsa', 'Lsat_1_v5_gn_4_160781' => 'lsa', 'Lsat_1_v5_gn_5_103561' => 'lsa', 'Lsat_1_v5_gn_5_118760' => 'lsa', 'Lsat_1_v5_gn_5_130560' => 'lsa', 'Lsat_1_v5_gn_5_33141' => 'lsa', 'Lsat_1_v5_gn_6_101001' => 'lsa', 'Lsat_1_v5_gn_8_95360' => 'lsa', 'Lsat_1_v5_gn_9_59821' => 'lsa', 'Manes.02G185501' => 'mes', 'Manes.04G128400' => 'mes', 'Manes.12G143600' => 'mes', 'Manes.13G076502' => 'mes', 'Manes.13G112300' => 'mes', 'Manes.15G164200' => 'mes', 'Manes.17G100200' => 'mes', 'Manes.18G096300' => 'mes', 'Mapoly0045s0033' => 'mpo', 'Mapoly0946s0001' => 'mpo', 'MBI01_g28039_MAGBIO' => 'mbi', 'MBI01_g46398_MAGBIO' => 'mbi', 'MBI01_g46399_MAGBIO' => 'mbi', 'MBI04_g22015_MAGBIO' => 'mbi', 'MCO07G588' => 'mco', 'MD00G1156800' => 'mdo', 'MD02G1184600' => 'mdo', 'MD05G1036100' => 'mdo', 'MD05G1067800' => 'mdo', 'MD10G1038200' => 'mdo', 'MD10G1077700' => 'mdo', 'MD15G1318800' => 'mdo', 'MD16G1146100' => 'mdo', 'MD17G1055100' => 'mdo', 'MD17G1193300' => 'mdo', 'Medtr1452s0010' => 'mtr', 'Medtr1663s0010' => 'mtr', 'Medtr1686s0010' => 'mtr', 'Medtr1812s0010' => 'mtr', 'Medtr1g097420' => 'mtr', 'Medtr2g101890' => 'mtr', 'Medtr4g012940' => 'mtr', 'Medtr4g069850' => 'mtr', 'Medtr5g015600' => 'mtr', 'Medtr5g036990' => 'mtr', 'Medtr6g039490' => 'mtr', 'Medtr8g092020' => 'mtr', 'MELO3C007629.2' => 'cme', 'MELO3C012529.2' => 'cme', 'MELO3C013180.2' => 'cme', 'MELO3C020964.2' => 'cme', 'MELO3C024246.2' => 'cme', 'Migut.B00246' => 'egut', 'Migut.E01727' => 'egut', 'Migut.H00354' => 'egut', 'Migut.K00510' => 'egut', 'Migut.L00066' => 'egut', 'Migut.N01233' => 'egut', 'Migut.N02942' => 'egut', 'MSTRG.16800' => 'ama', 'MSTRG.20090' => 'ama', 'MSTRG.22115' => 'ama', 'MSTRG.23676' => 'ama', 'MSTRG.24488' => 'ama', 'MSTRG.26358' => 'ama', 'MSTRG.3815' => 'ama', 'MSTRG.5394' => 'ama', 'Nitab4.5_0000184g0240' => 'nta', 'Nitab4.5_0000872g0180' => 'nta', 'Nitab4.5_0001000g0180' => 'nta', 'Nitab4.5_0001315g0270' => 'nta', 'Nitab4.5_0001417g0030' => 'nta', 'Nitab4.5_0001486g0050' => 'nta', 'Nitab4.5_0001532g0060' => 'nta', 'Nitab4.5_0001794g0140' => 'nta', 'Nitab4.5_0002859g0050' => 'nta', 'Nitab4.5_0006813g0010' => 'nta', 'Nitab4.5_0007691g0030' => 'nta', 'Nitab4.5_0008007g0010' => 'nta', 'Nitab4.5_0008314g0020' => 'nta', 'Nitab4.5_0009466g0010' => 'nta', 'Nn1g04577' => 'nnu', 'Nn1g04578' => 'nnu', 'Nn1g05155' => 'nnu', 'Nn2g11725' => 'nnu', 'Nn4g25316' => 'nnu', 'Nn5g29563' => 'nnu', 'Nn8g39155' => 'nnu', 'Oeu002239.1' => 'oeu', 'Oeu003558.1' => 'oeu', 'Oeu014347.1' => 'oeu', 'Oeu015850.1' => 'oeu', 'Oeu015980.1' => 'oeu', 'Oeu015981.1' => 'oeu', 'Oeu022059.1' => 'oeu', 'Oeu046072.2' => 'oeu', 'Oeu061452.1' => 'oeu', 'Os01g0227300' => 'osa', 'Os01g0714900' => 'osa', 'Os03g0616500' => 'osa', 'Os05g0516600' => 'osa', 'Os05g0536900' => 'osa', 'Peaxi162Scf00015g00025' => 'pax', 'Peaxi162Scf00016g00837' => 'pax', 'Peaxi162Scf00034g00068' => 'pax', 'Peaxi162Scf00106g01317' => 'pax', 'Peaxi162Scf00118g01929' => 'pax', 'PGR004G2579' => 'pgr', 'PGR042G1598' => 'pgr', 'PGR102G0284' => 'pgr', 'PGR102G1288' => 'pgr', 'PGR102G1358' => 'pgr', 'PGR102G1741' => 'pgr', 'PGSC0003DMG400000720' => 'stu', 'PGSC0003DMG400009094' => 'stu', 'PGSC0003DMG400031141' => 'stu', 'PGSC0003DMG400031206' => 'stu', 'PGSC0003DMG402002542' => 'stu', 'Phvul.002G011500' => 'pvu', 'Phvul.002G265500' => 'pvu', 'Phvul.007G085200' => 'pvu', 'Phvul.010G149200' => 'pvu', 'Phvul.011G046100' => 'pvu', 'Potri.001G182900' => 'ptr', 'Potri.002G062400' => 'ptr', 'Potri.003G053400' => 'ptr', 'Potri.004G153400' => 'ptr', 'Potri.005G085300' => 'ptr', 'Potri.005G198800' => 'ptr', 'Potri.007G055400' => 'ptr', 'Potri.007G079700' => 'ptr', 'Potri.009G115000' => 'ptr', 'Pp3c11_11200' => 'ppa', 'Pp3c11_11290' => 'ppa', 'Pp3c1_12070' => 'ppa', 'Pp3c2_24890' => 'ppa', 'Pp3c7_9300' => 'ppa', 'PRCOL_00002516' => 'pco', 'PRCOL_00006071' => 'pco', 'Prupe.3G068700' => 'ppe', 'Prupe.6G169600' => 'ppe', 'Prupe.6G221900' => 'ppe', 'Prupe.8G044200' => 'ppe', 'Prupe.8G098400' => 'ppe', 'Psat0s3193g0080' => 'psa', 'Psat0s5408g0040' => 'psa', 'Psat2g171280' => 'psa', 'Psat3g172760' => 'psa', 'Psat3g174600' => 'psa', 'Psat3g174680' => 'psa', 'Psat5g298320' => 'psa', 'Psat6g189480' => 'psa', 'Psat7g050800' => 'psa', 'Psat7g141120' => 'psa', 'Psat7g250320' => 'psa', 'PSO170G3846' => 'pso', 'PSO541G0636' => 'pso', 'PSO541G4801' => 'pso', 'PSO675G3636' => 'pso', 'PSO675G6338' => 'pso', 'PSO700G0119' => 'pso', 'PSO782G0943' => 'pso', 'PSO832G0474' => 'pso', 'PSO832G3309' => 'pso', 'QL02p036438' => 'qlo', 'QL02p036903' => 'qlo', 'QL02p085142' => 'qlo', 'QL05p022175' => 'qlo', 'QL06p031820' => 'qlo', 'QL06p039670' => 'qlo', 'QL11p043390' => 'qlo', 'RcHm_v2.0_Chr1g0315361' => 'rch', 'RcHm_v2.0_Chr2g0117211' => 'rch', 'RcHm_v2.0_Chr2g0138441' => 'rch', 'RcHm_v2.0_Chr2g0138631' => 'rch', 'RcHm_v2.0_Chr2g0138641' => 'rch', 'RcHm_v2.0_Chr6g0263971' => 'rch', 'RcHm_v2.0_Chr6g0273691' => 'rch', 'Rhsim10G0100700' => 'rsi', 'Sabra02G0050400' => 'sbr', 'Sabra03G0030000' => 'sbr', 'Sabra04G0101800' => 'sbr', 'Sabra05G0070200' => 'sbr', 'Sabra07G0047700' => 'sbr', 'Sabra09G0088100' => 'sbr', 'Sabra11G0023200' => 'sbr', 'Sabra11G0026400' => 'sbr', 'Sabra11G0056500' => 'sbr', 'Sabra16G0084600' => 'sbr', 'SalBow1G0781' => 'sbo', 'SalBow3G2688' => 'sbo', 'SalBow3G4394' => 'sbo', 'SalBow5G3768' => 'sbo', 'SalBow6G4414' => 'sbo', 'SalBow6G4513' => 'sbo', 'SalBow6G6003' => 'sbo', 'Sc02g0003750' => 'sci', 'Sc03g0002340' => 'sci', 'Sc03g0004460' => 'sci', 'Sc08g0000460' => 'sci', 'Sc09g0009070' => 'sci', 'Sc18g0001280' => 'sci', 'Sed0002461' => 'sed', 'Sed0007431' => 'sed', 'Sed0009396' => 'sed', 'Sed0009408' => 'sed', 'Sed0012994' => 'sed', 'Sed0013814' => 'sed', 'Sed0017159' => 'sed', 'Sed0023339' => 'sed', 'SEGI_01485' => 'sgi', 'SEGI_06920' => 'sgi', 'SEGI_23696' => 'sgi', 'SEGI_24863' => 'sgi', 'SEGI_27855' => 'sgi', 'SEGI_34259' => 'sgi', 'SEGI_38739' => 'sgi', 'SGA_v2.0_scaffold13G06548' => 'sas', 'SGA_v2.0_scaffold15G07449' => 'sas', 'SGA_v2.0_scaffold32G13164' => 'sas', 'SGA_v2.0_scaffold364G49964' => 'sas', 'SGA_v2.0_scaffold47G17702' => 'sas', 'SGA_v2.0_scaffold58G20546' => 'sas', 'SHI09109' => 'shi', 'SHI31766' => 'shi', 'SMO144G0160' => 'smo', 'SMO364G0092' => 'smo', 'SMO364G0657' => 'smo', 'Solyc01g109520.3' => 'sly', 'Solyc03g044020.4' => 'sly', 'Solyc03g120750.3' => 'sly', 'Solyc04g051680.4' => 'sly', 'Solyc04g072060.4' => 'sly', 'Sopen01g051710' => 'spe', 'Sopen03g007820' => 'spe', 'Sopen03g039570' => 'spe', 'Sopen04g023040' => 'spe', 'Sopen04g028230' => 'spe', 'Sp1g20250' => 'spa', 'Sp1g36180' => 'spa', 'Sp1g38810' => 'spa', 'Sp3g14450' => 'spa', 'Sp3g16910' => 'spa', 'Sp4g00980' => 'spa', 'Sp5g19220' => 'spa', 'Sp6g07900' => 'spa', 'TAR376G0399' => 'tar', 'TAR376G0447' => 'tar', 'TAR381G1242' => 'tar', 'TAR383G0638' => 'tar', 'TAR625G0516' => 'tar', 'TAR625G1449' => 'tar', 'TAR626G1294' => 'tar', 'THA.LOC104800096' => 'tha', 'THA.LOC104807724' => 'tha', 'THA.LOC104810223' => 'tha', 'THA.LOC104810526' => 'tha', 'THA.LOC104816098' => 'tha', 'THA.LOC104817985' => 'tha', 'THA.LOC104819266' => 'tha', 'THA.LOC104819604' => 'tha', 'THA.LOC104824853' => 'tha', 'Thecc.01G071800' => 'tca', 'Thecc.01G114800' => 'tca', 'Thecc.02G086500' => 'tca', 'Thecc.06G091000' => 'tca', 'Thecc.08G163800' => 'tca', 'Thecc.09G109200' => 'tca', 'Thhalv10000018m.g' => 'esa', 'Thhalv10000322m.g' => 'esa', 'Thhalv10001287m.g' => 'esa', 'Thhalv10006613m.g' => 'esa', 'Thhalv10008896m.g' => 'esa', 'Thhalv10011767m.g' => 'esa', 'Thhalv10011782m.g' => 'esa', 'Thhalv10021531m.g' => 'esa', 'Thhalv10021533m.g' => 'esa', 'Thhalv10023223m.g' => 'esa', 'Thhalv10028966m.g' => 'esa', 'TPR.G16191' => 'tpr', 'TPR.G17036' => 'tpr', 'TPR.G17679' => 'tpr', 'TPR.G19709' => 'tpr', 'TPR.G2244' => 'tpr', 'TPR.G34847' => 'tpr', 'TPR.G37270' => 'tpr', 'TPR.G610' => 'tpr', 'TWI09G1290' => 'twi', 'TWI12G0033' => 'twi', 'TWI18G1236' => 'twi', 'TWI31G1151' => 'twi', 'TWI60G1415' => 'twi', 'TWI75G0048' => 'twi', 'TWI79G0051' => 'twi', 'TWI79G0948' => 'twi', 'unitig_0.g505' => 'ugi', 'unitig_22.g6860' => 'ugi', 'unitig_26.g10247' => 'ugi', 'unitig_744.g24090' => 'ugi', 'unitig_8.g3569' => 'ugi', 'vmacro01505' => 'vma', 'vmacro02116' => 'vma', 'vmacro05404' => 'vma', 'vmacro06221' => 'vma', 'vmacro17498' => 'vma', 'vmacro18640' => 'vma', 'VMungo0251G3268' => 'vmu', 'VMungo0331G0482' => 'vmu', 'VMungo0720G0987' => 'vmu', 'VMungo1127G1088' => 'vmu', 'VMungo1215G2083' => 'vmu', 'Zm00001eb010290' => 'zma', 'Zm00001eb051460' => 'zma', 'Zm00001eb060820' => 'zma', 'Zm00001eb098240' => 'zma', 'Zm00001eb129810' => 'zma', 'Zm00001eb147190' => 'zma', 'Zm00001eb276970' => 'zma', 'Zm00001eb292930' => 'zma', 'Zm00001eb294170' => 'zma', 'Zm00001eb339100' => 'zma', 'Zm00001eb353080' => 'zma', 'Zm00001eb361460' => 'zma', 'Zm00001eb392140' => 'zma' ) $gf_id = 'HOM05D000726' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000726' ) $data_identifier = 'HOM05D000726' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 15, 'amhyb' => (int) 3, 'aly' => (int) 11, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 16, 'bra' => (int) 15, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 11, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 25, 'gra' => (int) 14, 'vvi' => (int) 8, 'han' => (int) 11, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 12, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 1, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb392140' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1